1. Hanqing Xiong, Zhenqiao Zhou, Mingqiang Zhu, Xiaohua Lv, Anan Li, Shiwei Li, Longhui Li, Tao Yang, Siming Wang, Zhongqin Yang, Tonghui Xu, Qingming Luo, Hui Gong*, Shaoqun Zeng*, Chemical reactivation of quenched fluorescent protein molecules enables resin-embedded fluorescence microimaging, Nature Communications, 2014, 5: 3992, doi: 10.1038/ncomms4992
2. Jingpeng Wu, Yong He, Zhongqin Yang, Congdi Guo, Qingming Luo, Wei Zhou, Shangbin Chen, Anan Li, Benyi Xiong, Tao Jiang, Hui Gong*, 3D BrainCV: Simultaneous visualization and analysis of cells and capillaries in a whole mouse brain with one-micron voxel resolution, NeuroImage, 2014, 87: 199-208
3. Bailei Sun, Lei Zhang, Hui Gong, Jinyan Sun, Qingming Luo*, Detection of optical neuronal signals in the visual cortex using continuous wave near-infrared spectroscopy, NeuroImage, 2014, 87: 190-198
4. Tingwei Quan, Jing Li, Hang Zhou, Shiwei Li, Ting Zheng, Zhongqing Yang, Qingming Luo, Hui Gong*, Shaoqun Zeng*, Digital reconstruction of the cell body in dense neural curcuits using a spherical-coordinated variational model, Scientific Reports, 2014, 4:4970, doi:10.10.8/srep04970
5. Lei Zhang, Jinyan Sun, Bailei Sun, Qingming Luo, Hui Gong*, Studying hemispheric laterlization during a Stroop task through near-infrared spectroscopy-based connectivity, Journal of Biomedical Optics, 2014, 19(5): 057012
6. Hui Gong1, Shaoqun Zeng1, Cheng Yan, Xiaohua Lv, Zhongqin Yang, Tonghui Xu, Zhao Feng, Wenxiang Ding, Xiaoli Qi, Anan Li, Jingpeng Wu, Qingming Luo*, Continuously tracing brain-wide long-distance axonal projections in mice at a one-micron voxel resolution, NeuroImage, 2013, 74: 87-98
7. Ting Zheng, Zhongqing Yang, Anan Li, Xiaohua Lv, Zhenqiao Zhou, Xiaojun Wang, Xiaoli Qi, Shiwei Li, Qingming Luo, Hui Gong*, Shaoqun Zeng*, Visualization brain circuits using two-photon fluorescence micro-optical sectioning tomography, Optics Express, 2013 21(8): 9839-9850.  
8. Zhongqin Yang, Bihe Hu, Yuhui Zhang, Qingming Luo, Hui Gong*, Development of a plastic embedding method for large-volume and fluorescent-protein-expressing tissues, PLoS One, 2013, 8(4): e60877     
9. Cheng Yan, Anan Li, Bin Zhang, Wenxiang Ding, Qingming Luo, Hui Gong*, Automated and accurate detection of soma location and surface morphology in large-scale 3D neuron images, PLoS One, 2013, 8(4): e62579.  
10. Tingwei Quan, Ting Zheng, Zhongqing Yang, Wenxiang Ding, Shiwei Li, Jing Li, Hang Zhou, Qingming Luo, Hui Gong*, Shaoqun Zeng*，NeuroGPS: automated localization of neurons for brain circuits using L1 minimization model, Scientific Reports, 2013, 3, 1414, DOI:10.1038/ srep01414  
11. Jinyan Sun, Bailei Sun, Lei Zhang, Qingming Luo, Hui Gong*. Correlation between hemodynamic and electrophysiological signals dissociates neural correlates of conflict detection and resolution in a Stroop task: a simultaneous near-infrared spectroscopy and event-related potential study. Journal of Biomedical Optics, 2013, 18(9), 096014-1-9.
12. Jiangbo Pu, Hui Gong, Xiangning Li, Qingming Luo, Developing neuronal networks: self-organized criticality predicts the future, Scientific Reports, 2013, 3: 1081, DOI: 10.1038/srep01081
13. Zhongxing Zhang, Bailei Sun, Hui Gong, Lei Zhang, Jinyan Sun, Bangde Wang, Qingming Luo, A fast neuronal signal-sensitive continuous-wave near-infrared imaging system, Review of Scientific Instruments, 2012, 83, 094301-1-094301-9
14. Guotao Quan, Hui Gong*, Yong Deng, Jianwei Fu, Qingming Luo, Monte Carlo-based fluorescence molecular tomography reconstruction method accelerated by a cluster of graphic processing units, Journal of Biomedical Optics, 2011, 16(2), 026018-1-026018-8 
15. Jianwei Fu, Xiaoquan Yang, Kan Wang, Qingming Luo, Hui Gong*, A generic, geometric co-calibration method for a combined system of fluorescence molecular tomography and micro-computed tomography with arbitrarily shaped objects, Medical Physics, 2011, 38(12), 6561-6570
16. Bin Zhang, Anan Li, Zhongqin Yang, Jingpeng Wu, Qingming Luo, Hui Gong*, Modified Golgi-Cox method for micrometer scale sectioning of the whole mouse brain, Journal of Neuroscience Methods, 2011, 197, 1-5
17. Anan Li1, Hui Gong1, Bin Zhang1, Qingdi Wang, Cheng Yan, Jingpeng Wu, Qian Liu, Shaoqun Zeng, Qingming Luo*, Micro-optical sectioning tomography to obtain a high-resolution atlas of the mouse brain, Science, 2010, 330(6009), 1404-1408
18. Ting Li, Qingming Luo, Hui Gong*, Gender-specific hemodynamics in prefrontal cortex during a verbal working memory task by near-infrared spectroscopy, Behavioural Brain Research, 2010, 209, 148-153
19. Jiahuan Zhai, Ting Li, Zhongxing Zhang, Hui Gong*, Hemodynamic and electrophysiological singnals of conflict processing in the Chinese-character Stroop task: a simultaneous near-infrared spectroscopy and event-related potential study, Journal of Biomedical Optics, 2009, 14(5), 054022